Content » Vol 96, Issue 2

Investigative Report

A Promoter Polymorphism of the Vitamin D Metabolism Gene Cyp24a1 is Associated with Severe Atopic Dermatitis in Adults

Jana Hallau1, Lutz Hamann2, Ralf R. Schumann2, Margitta Worm1 and Guido Heine1

1Klinik für Dermatologie, Venerologie und Allergologie, Allergie-Centrum-Charité, CCM, and 2Institut für Mikrobiologie und Hygiene, Charité – Universitätsmedizin Berlin, Berlin, Germany

Atopic dermatitis (AD) is a chronic inflammatory skin disease in which genetic and environmental factors result in impaired epidermal barrier functioning and an altered immune response. Vitamin D influences these 2 patho­mechanisms, and beneficial results have been suggested in AD. The aim of this study was to investigate the potential roles of the 2 essential vitamin D metabolizing enzymes. The frequencies of 6 common polymorphisms in the genes encoding the vitamin D synthesizing enzyme Cyp27b1 or the inactivating enzyme Cyp24a1 were assessed in 281 patients with AD and 278 healthy donors in a case-control setting. The Cyp24a1 rs2248359-major C allele was significantly over-represented in patients with AD compared with controls, which was more pronounced in patients with severe AD. In addition, haplotypes of the Cyp24a1 and Cyp27b1 genes were associated with AD. These data support that vitamin D mediates beneficial functions in AD and suggest that future studies on the impact of vitamin D on AD should consider the individual genotypes of the vitamin D metabolizing enzymes. Key words: vitamin D; atopic dermatitis; metabolism; cyp24a1; cyp27b1.

Accepted Aug 25, 2015; Epub ahead of print Aug 28, 2015

Acta Derm Venereol 2015; XX: XX–XX.

Priv. -Doz Dr. med. Guido Heine, Allergie-Centrum-Charité, CCM, Klinik für Dermatologie, Venerologie und Allergologie, Charité – Universitätsmedizin Berlin, Charitéplatz 1, DE-10117 Berlin, Germany. E-mail: guido.heine@charite.de

Atopic dermatitis (AD) is a chronic inflammatory skin disease, in which genetic and environmental factors result in impaired epidermal barrier functioning and an altered immune response. Vitamin D influences these 2 mechanisms, and a beneficial impact of vitamin D supplementation in AD has been suggested, e.g. by our findings that a defined vitamin D receptor (VDR) haplotype is more frequent in adult patients with severe AD (1), the beneficial action of a synthetic vitamin D receptor agonist in a pre-clinical model (2), and the association of vitamin D deficiency with AD severity (3) and a recent clinical pilot trial in children with winter-related AD (4).

Most vitamin D functions are mediated by the nuclear VDR following binding of its natural ligand calcitriol (chem. 1,25(OH)2D) and regulation of target gene transcription. In keratinocytes, different genes associated with the epidermal barrier function are induced by VDRs, such as filaggrin, involucrin, loricrin and epidermal transglutaminase (2). VDR also impacts the antigen presentation and T-cell differentiation, resulting in a tolerogenic rather than an inflammatory phenotype. It is notable that bioactive calcitriol is metabolized endogenously in keratinocytes and lymphocytes by enzymes encoded by the genes Cyp27b1 (calcitriol-synthesis from 25-hydroxyvitamin D) and Cyp24a1 (calcitriol-inactivation), respectively. Alterations in these 2 genes may impact on VDR activity, e.g. through prolonged or reduced signalling. In agreement with this, single nucleotide polymorphisms (SNPs) in the Cyp27b1 gene were identified in autoimmune diseases and Cyp24a1 SNPs were linked to allergic asthma. The aim of the present study was to examine the frequencies of Cyp27b1 and Cyp24a1 SNPs in adults with AD and non-atopic individuals.

PATIENTS AND METHODS

For details of patient characteristics and methods, see Appendix S11 and Table I. The study procedures were approved by the local ethics committee and performed in accordance with ethical standards on human experimentation and with the Declaration of Helsinki 1975, 1983 revision. Both cohorts were genotyped for 6 SNPs in genes encoding Cyp27b1 and Cyp24a1 using real-time-PCR with subsequent melting curve analysis. The haplotype sequences were analysed in silico, as described previously (1). Serum concentrations of 25(OH)D were measured (by enzyme-immunoassay (EIA), IDS Systems, Hamburg, Germany).

Table I. Demographic characteristics of patients with atopic dermatitis (AD) and controls

 

Controls n = 278

Patients with AD

All n = 281

Mild/moderate (SCORAD 9–40) n = 126

Severe (SCORAD > 40) n = 155

Male, n (%)

98 (35.3)

121 (43.1)

45 (35.7)

76 (49.0)

Female, n (%)

180 (64.7)

160 (56.9)

81 (64.3)

79 (51.0)

Age, years, median (IQR)

35 (31–41)

37 (27–48)

33 (26–43)

41 (29–53)

SCORAD, mean ± SD

46.8 ± 18.4

27.6 ± 8.1

58.8 ± 11.5

SCORAD: scoring atopic dermatitis; IQR: interquartile range; SD: standard deviation.

RESULTS

Significant over-representation of the Cyp24a1-SNP rs2248359 major C allele genotypes were found in patients with AD compared with healthy controls (odds ratio (OR) 2.10; 95% confidence interval (95% CI) 1.1–4.1, p = 0.03, Table II). In patients stratified according to severity, this over-representation was even more pronounced (OR 3.5 (1.4–8.8). The Cyp24a1 SNP rs2296241 was neither associated with AD as such nor after stratification according to severity (Table II). The linkage disequilibrium (LD) was average to high between both Cyp24a1 SNPs (D’=70; maximum 100=linked, Fig. S11). The haplotype rs2248359T, rs2296241A (Cyp24a1-TA) was more frequent in healthy individuals (p = 0.005–0.044) and, conversely, the haplotype Cyp24a1-CA in patients with severe AD or AD (p = 0.003–0.012), respectively (Table III, with or without correction for multiple comparisons). It is notable that both Cyp24a1-SNPs are located in evolutionarily conserved regions of the human and murine genome (Fig. S21), suggesting functional relevance (5).

Table II. Single nucleotide polymorphism frequencies in the atopic dermatitis (AD) patient and healthy control groups

Controls n (%)

AD–group n (%)

Odds ratio (95% CI)

p-value

Severe ADb n (%)

Odds ratio (95% CI)

p-value

Cyp27b1a rs703842

CC

125 (45.1)

127 (45.5)

67 (43.5)

CT

119 (43.0)

122 (43.7)

1.0 (0.7–1.4)

1.0

73 (47.4)

0.9 (0.6–1.3)

0.60

TT

33 (11.9)

30 (10.8)

1.1 (0.6–1.9)

0.8

14 (9.1

1.3 (0.6–2.5)

0.62

n

277

279

154

Hardy–Weinberg equilibrium

0.85

1.0

0.65

Cyp27b1a

rs10877012

CC

139 (50.2)

132 (47.3)

70 (45.5)

CA

108 (39.0)

118 (42.3)

0.9 (0.6–1.2)

0.49

71 (46.1)

0.8 (0.5–1.2)

0.25

AA

30 (10.8)

29 (10.4)

1.0 (0.6–1.7)

0.92

13 (8.4)

1.2 (0.6–2.4)

0.81

n

277

279

154

Hardy–Weinberg equilibrium

0.44

0.94

0.70

Cyp27b1a

rs3782130

CC

125 (45.1)

127 (45.5)

67 (43.5)

CG

119 (43.0)

122 (43.7)

1.0 (0.7–1.4)

1.00

73 (47.4)

0.9 (0.6–1.3)

0.60

GG

33 (11.9)

30 (10.8)

1.1 (0.6–1.9)

0.81

14 (9.1)

1.3 (0.6–2.5)

0.62

n

277

279

154

Hardy–Weinberg equilibrium

0.85

1.00

0.65

Cyp27b1a

rs4646536

TT

123 (44.4)

128 (45.9)

68 (44.2)

TC

126 (45.5)

121 (43.4)

1.1 (0.8–1.5)

0.72

72 (46.8)

1.0 (0.6–1.5)

1.00

CC

28 (10.1)

30 (10.8)

1.0 (0.6–1.7)

1.00

14 (9.1)

1.1 (0.6–2.2

0.92

n

277

279

154

Hardy–Weinberg equilibrium

0.88

0.98

0.71

Cyp24a1a

rs2248359

CC

132 (47.5)

133 (49.4)

82 (55.8)

CT

112 (40.3)

120 (44.6)

0.9 (0.7–1.3)

0.8

59 (40.1)

1.2 (0.8–1.4

0.44

TT

34 (12.2)

16 (5.9)

2.1 (1.1–4.1)

0.03

6 (4.1)

3.5 (1.4–8.8)

0.008

n

278

269

147

Hardy–Weinberg equilibrium

0.41

0.26

0.51

Cyp24a1a

rs2296241

GG

78 (28.1)

58 (21.6)

35 (23.8)

GA

123 (44.2)

141 (52.4)

0.6 (0.4–1.0)

0.05

77 (52.4)

0.7 (0.4–1.2

0.23

AA

77 (27.7)

70 (26.0)

0.8 (0.5–1.3)

0.47

35 (23.8)

1.0 (0.6–1.7)

0.92

n

278

269

147

Hardy–Weinberg equilibrium

0.16

0.71

0.85

aAnalysis for some DNAs failed; bSCORAD>40.

95% CI: 95% confidence interval.

Values in bold are statistically significant.

Regarding the Cyp27b1-polymorphisms, no significant differences were observed in genotype distribution between both groups (p > 0.05; Table II). The Cyp27b1 haplotypes were tightly genetically linked (D’=94–97, Fig. S11). The rare haplotype TCGC (rs703842T, rs10877012C, rs3782130G, rs4646536C) was found to be protective for AD in a small subpopulation of healthy individuals (p = 0.004). One of 4 investigated Cyp27b1-SNP, rs4646536, was evolutionarily conserved (Fig. S31).

In addition, serum 25(OH)D concentrations among 98 patients with AD (38.1 ± 19.0 nmol/l) and 45 control subjects (36.4 ± 16.4 nmol/l) were comparable between the groups (p = 0.77, Fig. S41). The 25(OH)D levels were not associated with any SNP or haplotype investigated in this study (p = 0.382–0.977) (see Appendix S11; Table IV).

DISCUSSION

The data presented here suggest that altered vitamin D metabolism due to genetic variances impacts on the pathogenesis of AD. We identified significant over-representation of the Cyp24a1 rs2248359 SNP C allele and a haplotype with rs2296241 (No. 7 in Table III) in adults with severe AD compared with healthy controls. These polymorphisms in the promoter region or exon 4, respectively, are located in evolutionarily conserved regions between humans and mice, suggesting a functional relevance, e.g. by conserved transcription factor binding or protein function (5). The identified Cyp24a1 allele was shown to result in enhanced mRNA expression and calcitriol-inactivation, resulting in decreased VDR activity (6). In agreement, this Cyp24a1 allele has also been identified in patients with allergic asthma (7, 8), a disease in which epidemiological data suggest beneficial functions of vitamin D-signalling (9). Thus, the Cyp24a1-SNP may be involved in the pathogenesis of AD by reducing VDR activity that mediates beneficial functions. The SNP frequencies in the Cyp27b1-gene encoding the enzyme synthesizing active calcitriol from its precursor were comparable between the AD and control groups. Of interest, we identified a rare subtype of adult patients with severe AD carrying a defined Cyp27b1 genotype (number 3 in Table III, 3 AD patients, 9 controls), which is thought to result in a loss of function, as the respective alleles were previously associated with reduced Cyp27b1 mRNA expression (10, 11), reduced 25(OH)D-activation (12, 13), and the vitamin D-susceptible disease multiple sclerosis (14). However, the relevance of the genotypes identified here in AD is not known. As the expression and function of VDR and vitamin D metabolism are regulated in a cell-specific manner, functional genetic assays should consider the complex spatio-temporal interaction of cells in AD, which has not yet been established, but is an interesting topic for further research.

Table III. Haplotypes of Cyp27b1 and Cyp24a1 genotypes of atopic dermatitis (AD) and healthy controls

Number

Cyp27b1 rs703842

Cyp27b1 rs10877012

Cyp27b1 rs3782130

Cyp27b1 rs4646536

Control (%) (n = 277)

AD (%) (n = 279)

pb

pcorr c

Severe ADa (%)

(n = 154)

pb

pcorrc

1

C

C

C

T

63.7

67.2

0.222

0.567

66.9

0.438

0.965

2

T

A

G

C

27.1

31.3

0.116

0.465

31.1

0.201

0.546

3

T

C

G

C

3.4

0.9

0.004

0.009

1.0

0.029

0.098

4

T

A

G

T

1.6

0.3

0.087

0.380

Cyp24a1

rs2248359

Cyp24a1

rs2296241

(n = 278)

(n = 269)

(n = 147)

5

C

G

46.4

42.8

0.229

0.576

45.7

0.822

0.995

6

T

A

28.6

23.3

0.044

0.143

19.9

0.005

0.021

7

C

A

21.2

29.0

0.003

0.012

30.1

0.003

0.015

8

T

G

3.8

5.0

0.328

0.725

4.3

0.649

0.964

aSCORAD > 40; bp-value 2 × 2 χ2-test; cpcorr=permutated p-value.

Values in bold are statistically significant.

Table IV. Serum 25(OH)D concentration in relation to the genotype

Gene

SNP

Genotype

25(OH)D concentration (nmol/l)

p*

Wt (n)

Het (n)

Hom (n)

Wt Mean ± SD

Het Mean ± SD

Mut Mean ± SD

Cyp27b1

rs703842

CC (62)

CT (68)

TT (12)

36.7 ± 19.2

37.0 ± 16.8

45.8 ± 20.1

0.697

rs10877012

CC (64)

CA (66)

AA (12)

37.2 ± 14.1

36.5 ± 18.5

45.8 ± 19.9

0.863

rs3782130

CC (64)

CG (66)

GG (12)

37.2 ± 19.5

36.5 ± 16.4

45.8 ± 20.1

0.862

rs4646536

TT (64)

CT (66)

CC (12)

37.1 ± 19.2

36.6 ± 16.7

45.8 ± 20.1

0.896

Cyp24a1

rs2248359

CC (68)

CT (43)

TT (22)

35.9 ± 16.8

38.5 ± 18.3

41.4 ± 20.6

0.382

rs2296241

GG (30)

GA (68)

AA (35)

36.8 ± 19.5

37.7 ± 16.4

38.3 ± 20.1

0.977

SD: standard deviation; Wt: major allele; Het: heterozygous; Hom: homozygous minor allele; *Kruskal–Wallis test.

The present study did not find a significant impact of any Cyp24a1 or Cyp27b1 SNP with 25(OH)D serum concentrations. This may be attributed to the low sample size, or more probably, to the low 25(OH)D-concentrations resulting rather from the insufficient UVB exposure during the winter months (15) than from VDR-dependent action of vitamin D metabolizing enzymes. Whether more prominent differences are prevalent during summer, in vitamin D sufficiency, is not known.

In conclusion, this study shows a weak, but significant, association of defined genetic variations in vitamin D metabolism with AD in adults. This may represent a polygenic disease background for AD and/or suggests that a subgroup of patients with AD benefits from VDR signalling, as suggested by a recent controlled clinical trial in children with AD (4). To determine whether the findings of the present study are clinically relevant requires both reproduction of the findings in an independent cohort and proof-of-concept in a controlled clinical trial in adults investigating the impact of 25(OH)D on AD, including monitoring of 25(OH)D status and consideration of the individual genotype.

ACKNOWLEDGEMENTS

The authors would like to thank Sabine Dölle for clinical support and Fränzi Creutzburg, Diana Wöllner and Dennis Ernst for excellent technical assistance.

JH, LH, RRS, MW and GH have no conflicts of interest to declare. This work was supported by a research grant to MW from the “Investitionsbank Berlin”, from the Deutsche Forschungsgemeinschaft (DFG, SFB650-TP5 and TRR130-P19) to MW and GH and by the Charité – Universitätsmedizin Berlin.

11033.png

1http://www.medicaljournals.se/acta/content/?doi=10.2340/00015555-2226

REFERENCES

1. Heine G, Hoefer N, Franke A, Nothling U, Schumann RR, Hamann L, et al. Association of vitamin D receptor gene polymorphisms with severe atopic dermatitis in adults. Br J Dermatol 2013; 168: 855–858.

2.
Hartmann B, Heine G, Babina M, Steinmeyer A, Zugel U, Radbruch A, et al. Targeting the vitamin D receptor inhibits the B cell-dependent allergic immune response. Allergy 2011; 66: 540–548.

3.
Peroni DG, Piacentini GL, Cametti E, Chinellato I, Boner AL. Correlation between serum 25-hydroxyvitamin D levels and severity of atopic dermatitis in children. Br J Dermatol 2011; 164: 1078–1082.

4.
Camargo CA, Jr, Ganmaa D, Sidbury R, Erdenedelger K, Radnaakhand N, Khandsuren B. Randomized trial of vitamin D supplementation for winter-related atopic dermatitis in children. J Allergy Clin Immunol 2014; 134: 831–835 e831.

5.
Nardone J, Lee DU, Ansel KM, Rao A. Bioinformatics for the ‘bench biologist’: how to find regulatory regions in genomic DNA. Nature Immunol 2004; 5: 768–774.

6.
Ramasamy A, Trabzuni D, Forabosco P, Smith C, Walker R, Dillman A, et al. Genetic evidence for a pathogenic role for the vitamin D3 metabolizing enzyme in multiple sclerosis. Multiple Sclerosis Rel Dis 2014; 3: 211–219.

7.
Bosse Y, Lemire M, Poon AH, Daley D, He JQ, Sandford A, et al. Asthma and genes encoding components of the vitamin D pathway. Respiratory Res 2009; 10: 98.

8.
Wjst M. Variants in the vitamin D receptor gene and asthma. BMC Genet 2005; 6: 2.

9.
Brehm JM, Schuemann B, Fuhlbrigge AL, Hollis BW, Strunk RC, Zeiger RS, et al. Serum vitamin D levels and severe asthma exacerbations in the Childhood Asthma Management Program study. J Allergy Clin Immunol 2010; 126: 52–58 e55.

10.
Orton SM, Morris AP, Herrera BM, Ramagopalan SV, Lincoln MR, Chao MJ, et al. Evidence for genetic regulation of vitamin D status in twins with multiple sclerosis. Amer J Clin Nutrit 2008; 88: 441–447.

11.
Hypponen E, Berry DJ, Wjst M, Power C. Serum 25-hydroxyvitamin D and IgE – a significant but nonlinear relationship. Allergy 2009; 64: 613–620.

12.
Ramos-Lopez E, Bruck P, Jansen T, Pfeilschifter JM, Radeke HH, Badenhoop K. CYP2R1-, CYP27B1- and CYP24-mRNA expression in German type 1 diabetes patients. J Steroid Biochem Mol Biol 2007; 103: 807–810.

13.
Clifton-Bligh RJ, Nguyen TV, Au A, Bullock M, Cameron I, Cumming R, et al. Contribution of a common variant in the promoter of the 1-alpha-hydroxylase gene (CYP27B1) to fracture risk in the elderly. Calcified Tissue Int 2011; 88: 109–116.

14.
Australia and New Zealand Multiple Sclerosis Genetics Consortium (ANZgene). Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20. Nature Genetics 2009; 41: 824–828.

15.
Heine G, Lahl A, Muller C, Worm M. Vitamin D deficiency in patients with cutaneous lupus erythematosus is prevalent throughout the year. Br J Dermatol 2010; 163: 863–865.